如何解决无法使用pip3.6安装软件包找不到pyconfig.h
我在使用pip3.6安装软件包时遇到了麻烦。具体来说,使用命令pip3.6 install --user plumed
,出现以下错误:
Collecting plumed
Using cached plumed-2.6.1.tar.gz (189 kB)
Building wheels for collected packages: plumed
Building wheel for plumed (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3.6 -u -c 'import sys,setuptools,tokenize; sys.argv[0] = '"'"'/tmp/pip-install-cnvim96k/plumed/setup.py'"'"'; __file__='"'"'/tmp/pip-install-cnvim96k/plumed/setup.py'"'"';f=getattr(tokenize,'"'"'open'"'"',open)(__file__);code=f.read().replace('"'"'\r\n'"'"','"'"'\n'"'"');f.close();exec(compile(code,__file__,'"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-js3bt49u
cwd: /tmp/pip-install-cnvim96k/plumed/
Complete output (17 lines):
Module name plumed
Version number 2.6.1
using available plumed.cpp file
running bdist_wheel
running build
running build_ext
building 'plumed' extension
creating build
creating build/temp.linux-x86_64-3.6
/home/wei-tse/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc -DNDEBUG -g -fwrapv -O2 -Wall -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/wei-tse/anaconda3/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/wei-tse/anaconda3/include -fPIC -I./include -I/usr/include/python3.6m -c plumed.cpp -o build/temp.linux-x86_64-3.6/plumed.o -D__PLUMED_HAS_DLOPEN -D__PLUMED_WRAPPER_LINK_RUNTIME=1 -D__PLUMED_WRAPPER_CXX=1 -D__PLUMED_WRAPPER_IMPLEMENTATION=1 -D__PLUMED_WRAPPER_EXTERN=0 -D__PLUMED_WRAPPER_CXX_DEFAULT_INVALID=1
In file included from /usr/include/python3.6m/Python.h:8:0,from plumed.cpp:31:
/usr/include/python3.6m/pyconfig.h:3:12: fatal error: x86_64-linux-gnu/python3.6m/pyconfig.h: No such file or directory
# include <x86_64-linux-gnu/python3.6m/pyconfig.h>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
error: command '/home/wei-tse/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for plumed
Running setup.py clean for plumed
Failed to build plumed
Installing collected packages: plumed
Running setup.py install for plumed ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3.6 -u -c 'import sys,'"'"'exec'"'"'))' install --record /tmp/pip-record-5tvrlz45/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/wei-tse/.local/include/python3.6m/plumed
cwd: /tmp/pip-install-cnvim96k/plumed/
Complete output (17 lines):
Module name plumed
Version number 2.6.1
using available plumed.cpp file
running install
running build
running build_ext
building 'plumed' extension
creating build
creating build/temp.linux-x86_64-3.6
/home/wei-tse/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc -DNDEBUG -g -fwrapv -O2 -Wall -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/wei-tse/anaconda3/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/wei-tse/anaconda3/include -fPIC
-I./include -I/usr/include/python3.6m -c plumed.cpp -o build/temp.linux-x86_64-3.6/plumed.o -D__PLUMED_HAS_DLOPEN -D__PLUMED_WRAPPER_LINK_RUNTIME=1 -D__PLUMED_WRAPPER_CXX=1 -D__PLUMED_WRAPPER_IMPLEMENTATION=1 -D__PLUMED_WRAPPER_EXTERN=0 -D__PLUMED_WRAPPER_CXX_DEFAULT_INVALID=1
In file included from /usr/include/python3.6m/Python.h:8:0,from plumed.cpp:31:
/usr/include/python3.6m/pyconfig.h:3:12: fatal error: x86_64-linux-gnu/python3.6m/pyconfig.h: No such file or directory
# include <x86_64-linux-gnu/python3.6m/pyconfig.h>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
error: command '/home/wei-tse/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/bin/python3.6 -u -c 'import sys,'"'"'exec'"'"'))' install --record /tmp/pip-record-5tvrlz45/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/wei-tse/.local/include/python3.6m/plumed Check the logs for full command output.
我知道论坛上已经有很多相关的讨论,但是没有一种解决方案对我有用。我尝试了以下解决方案:
-
sudo apt-get install python-dev libxml2-dev libxslt-dev
-
sudo apt-get install python3.6-dev
-
export CPLUS_INCLUDE_PATH="$CPLUS_INCLUDE_PATH:/usr/include/x86_64-linux-gnu/python3.6m/pyconfig.h
奇怪的是我在pyconfig.h
中有/usr/include/x86_64-linux-gnu/python3.6m/
,但是在使用pip3.6时找不到。我使用的是Ubuntu 18.04,因此系统的点与Python 3.6.9相关。我想知道是否有任何解决方案可以解决此问题。谢谢!
解决方法
对我来说,原来一个旧软件包没有完全安装在某个地方。如果错误消息中的任何地方出现apt-get -f install
,只需运行该错误,它将重新安装软件包。并非100%肯定它适用于所有人,但这是我的具体问题。
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