更新后 anova() 无法与 lme 对象一起正常工作 - 我错过了什么吗？

如何解决更新后 anova() 无法与 lme 对象一起正常工作 - 我错过了什么吗？

我有一个到目前为止运行良好的代码。我想用 gls、lme 和 gamm（来自包 nlme 和 mgcv）测试东西，我用 anova() 比较了不同的模型。但是，我需要另一个包，它不适用于我的 R 版本（已使用近一年）。因此，我更新了 R（通过 updater 包）和 RStudio。

现在的问题是，anova() 在运行后不提供任何输出，或者只提供“Denom. DF: 91”而没有其他任何输出。

现在我尝试了不同的方法并进行了大量搜索，但我发现当前没有解决此类问题的威胁，而查看帮助文件时只是说，它应该像我使用的那样工作。因此，我怀疑我错过了一些重要的东西（甚至可能很明显），但我不明白。我希望你能告诉我我哪里做错了。

这里有一些数据可以玩（从txt文件复制）：

"treat" "x" "time" "nest"
"1" "1" 49.37 1 "K1"
"2" "1" 48.68 1 "K2"
"3" "2" 44.7 1 "T7"
"4" "2" 49.3 1 "T8"
"5" "1" 48.78 1 "K3"
"6" "2" 42.37 1 "T10"
"7" "1" 39.26 1 "K4"
"8" "2" 46.36 1 "T11"
"9" "1" 40.36 1 "K5"
"10" "2" 47.14 1 "T9"
"11" "1" 48.81 1 "K6"
"12" "1" 40.4 1 "K10"
"13" "2" 53.42 1 "T4"
"14" "2" 46.85 1 "T5"
"15" "2" 44.58 1 "T2"
"16" "2" 47.51 1 "T6"
"17" "1" 51.7 1 "K8"
"18" "1" 48.16 1 "K7"
"19" "2" 48.86 1 "T3"
"20" "1" 44.6 1 "K11"
"21" "1" 49.71 1 "K9"
"22" "2" 44.54 1 "T1"
"23" "2" 41.55 2 "T3"
"24" "1" 32.55 2 "K3"
"25" "1" 42.15 2 "K1"
"26" "2" 51.06 2 "T1"
"27" "1" 38.43 2 "K11"
"28" "2" 39.91 2 "T11"
"29" "1" 36.73 2 "K7"
"30" "2" 50.19 2 "T4"
"31" "1" 42.26 2 "K8"
"32" "1" 43.02 2 "K6"
"33" "2" 37.6 2 "T10"
"34" "1" 33.42 2 "K4"
"35" "2" 39.64 2 "T5"
"36" "2" 43.56 2 "T2"
"37" "2" 35.31 2 "T7"
"38" "2" 37 2 "T8"
"39" "2" 40.87 2 "T6"
"40" "1" 35.29 2 "K9"
"41" "2" 41.83 2 "T9"
"42" "1" 37.88 2 "K10"
"43" "1" 36.5 2 "K5"
"44" "1" 34.21 3 "K4"
"45" "1" 38.04 3 "K6"
"46" "1" 35.14 3 "K3"
"47" "2" 38.18 3 "T10"
"48" "1" 40.26 3 "K11"
"49" "2" 37.09 3 "T3"
"50" "2" 43.1 3 "T11"
"51" "2" 34.26 3 "T7"
"52" "1" 36.58 3 "K9"
"53" "1" 35.81 3 "K2"
"54" "1" 39.83 3 "K10"
"55" "2" 37.65 3 "T6"
"56" "1" 39.8 3 "K7"
"57" "1" 36.41 3 "K8"
"58" "1" 35.22 3 "K5"
"59" "2" 39.68 3 "T8"
"60" "2" 41.12 3 "T1"
"61" "2" 36.93 3 "T9"
"62" "1" 35.66 3 "K1"
"63" "2" 36.91 3 "T4"
"64" "2" 38.84 3 "T5"
"65" "2" 34.31 3 "T2"
"66" "1" 32.71 4 "K9"
"67" "2" 37.84 4 "T11"
"68" "1" 28.01 4 "K10"
"69" "2" 39.69 5 "T11"
"70" "2" 35.08 4 "T10"
"71" "2" 34.43 4 "T9"
"72" "1" 32.12 4 "T8"
"73" "2" 30.41 4 "T7"
"74" "1" 31.81 4 "K7"
"75" "2" 36.41 4 "T6"
"76" "1" 29.17 5 "K6"
"77" "1" 28.59 4 "K6"
"78" "2" 33.99 4 "T5"
"79" "1" 30.41 4 "K5"
"80" "1" 29.8 4 "K4"
"81" "2" 34.72 4 "T4"
"82" "2" 34.38 4 "T3"
"83" "1" 28.12 4 "K3"
"84" "2" 34.62 4 "T2"
"85" "1" 31.88 4 "K2"
"86" "1" 29.35 4 "K1"
"87" "2" 37.95 4 "T1"
"88" "2" 40.85 5 "T4"
"89" "2" 35.07 5 "T5"
"90" "2" 36.15 5 "T8"
"91" "2" 36.48 5 "T10"
"92" "1" 33.73 4 "K8"
"93" "1" 28.17 5 "K9"
"94" "1" 32.81 5 "K10"
"95" "1" 32.17 4 "K11"

这基本上是我尝试运行的模型之一：

test <- read.table(file="C:/Users/marvi_000/Desktop/testdata.txt")
str(test)
test$treat <- as.factor(test$treat)
test$nest <- as.factor(test$nest)

library(nlme)

m.test <- gls(x ~ treat * time,correlation = corAR1(form =~ time | nest),test,na.action = na.omit)
anova(m.test)

输出为：

德诺姆。 DF：91

将模型与 nova(m1,m2) 进行比较时，什么也没有发生。

当我从包 gamm 运行 mgcv 并使用 anova(m$lme) 或 anova(m1$lme,m2$lme) 时，情况也是如此。

我会很感激任何帮助或提示，为我指明正确的方向。非常感谢！

编辑： 经过一番讨论，我发现这是脚本的问题。我正在使用 RStudio 和 RMarkdown。但是，当我在降价脚本中运行代码（使用 cntrl+enter，逐行）时，anova(lmemodel) 命令无法正常工作。但是，如果我只是将这个单个命令复制到平面 r 脚本中（仍然使用当前环境），则该命令会正确执行并显示所需的输出。 我不知道那里发生了什么。如果有人知道问题出在哪里，或者如何解决它，我仍然很乐意听到。